1.  1981 Sazonov, V.N. ; Stuchebrukhov, A.A. On Statistics of the Ensemble of Oscillators Under Excitation. II. Parametric Excitation of Linear Quantum Oscillators. Chemical Physics 56: 391-398.

2.  1981 Stuchebrukhov, A.A. Cooling of Internal Degrees of Freedom of Atoms and Molecules Using Resonance Radiation. Kvantovaya Elecrionika (Russian) 8: 1906-1908; (English Translation: Soviet Journal of Quantum Electronics, 11: 1152-1154.

3.  1982 Sazonov, V.N.; Stuchebrukhov, A.A.; Zatsepin, S.V. On Statistics of an Ensemble of Oscillators Under Excitation. III. Quantum Non-linear Oscillators with Fast Phase Relaxation in a Non-Monochromatic External Field. Chemical Physics 69: 459-471.

4.  1983 Sazonov, V.N. ; Stuchebrukhov, A.A. Excitation of a Quantum Linear Oscillator in a Thermostat with a Nonmonochromatically Varied Frequency by an External Force. Zhurnal Experimental'noy i Teoreticheskoy Fiziki (Russian) 84: 3-14; (English Translation: Soviet Physics - JETP 57: 1-7.)

5.  1984 Sazonov, V.N.; Stuchebrukhov, A.A. Statistics of an Ensemble of Oscillators Under Excitation. V. Analysis of Experiments on Absorption of CO2-Laser Radiation by SF6 Based on Triply Degenerate Oscillator Model. Chemical Physics 84: 193-202.

6.  1984 Kuzmin, M.V.; Stuchebrukhov, A.A. Multiple-Photon Dissociation of Polyatomic Molecules Under Vibrational Deactivation by a Buffer Gas. Chemical Physics 83: 115-124.

7.  1984 Kuzmin, M.V. ; Stuchebrukhov, A.A. Effect of Inhomogeneity of Absorption in Collisionless Multiple-Photon Dissociation. Chemical Physics 107: 256-260.

8.  1984 Bagratashvili, V.N.; Brodskaya, E.A.; Verechagina, L.N.; Kuzmin, M.V.; Osmanov,R.R.; Putilin, F.N.; Stuchebrukhov, A.A. Variation of the Absorption Cross Section of High-Power Infrared Laser Radiation in Homologous Series of CnH2n+1OH Molecules. Kvantovaya electronika (Russian) 11: 2316-2324. (English translation: Soviet Journal of Quantum Electronics 14: 1536-1541.)

9.  1985 Kuzmin, M.V.; Stuchebrukhov, A.A. Threshold Energy Dependence of Intramolecular Vibrational Redistribution (IVR) Rates of Isolated Polyatomic Molecules. Chemical Physics Letters 119: 556-560.

10.  1985 Bagratashvili, V.N.; Kuzmin, M.V.; Letokhov, V.S.; Stuchebrukhov, A.A. Theory of Multiple-Photon IR Excitation of Polyatomic Molecules in the Model of Active and Passive Modes of a Vibrational Reservoir. Chemical Physics 97: 13-29.

11.  1986 Kuzmin, M.V.; Letokhov, V.S.; Stuchebrukhov, A.A. Threshold Energy Dependence of the Intramolecular Vibrational Relaxation Rate for an Isolated Polyatomic Molecule. Zhurnal Experimental'noy i Teorelicheskoy Fiziki (Russian) 90: 458-470; (English translation: Soviet Physics - JETP 63: 264-276.)

12.  1986 Stuchebrukhov, A.A. On the Theory of Intramolecular Vibrational Relaxation of Polyatomic Molecules. Zhurnal Experimental'noy i Teorelicheskoy Fiziki (Russian) 91: 2014-2030; (English translation: Soviet Physics - JETP 64: 1195-1204.)

13.  1986 Bagratashvili, V.N., Ionov, S.I.; Letokhov, V.S. ; Lokhman, V.N.; Makarov, G.N. and Stuchebrukhov, A.A. Uniform Spectrum of Vibrational Transitions and the Intramolecular Vibrational-relaxation Time of a Highly Excited Polyatomic Molecule. Pis'ma v Zhurnal Experimental'noy i Teorelicheskoy Fiziki (Russian) 44: 450-453; (English translation: Soviet Physics - JETP Letters 44: 580-583.)

14.  1986 Stuchebrukhov, A.A.; Khromov, I.E. The Infrared Absorption Spectrum of a Multiatomic Molecule Highly Excited by Oscillations. Kratkie Soobshcheniya po Fizike (Russian) 7: 22-25; (English translation: Soviet Physics - Lebedev Institute Reports 7: 36-42.)

15.  1986 Stuchebrukhov, A.A.; Kuzmin, M.V.; Bagratashvili, V.N.; Letokhov, V.S. Threshold Energy Dependence of Intramolecular Vibrational Relaxation in Polyatomic Molecules. Chemical Physics 107: 429-443.

16.  1986 Kuzmin, M.V.; Nemov, I.E.; Stuchebrukhov, A.A.; Bagratashvili, V.N. Letokhov, V.S. Chaotic Non-Ergodic Vibrational Motion in a Polyatomic Molecule. Chemical Physics Letters 124: 522-526.

17.  1987 Bagratashvili, V.N.; Burimov, V.N.; Ionov, S.I.; Sviridov, A.P.; Turovets, I.M.; Stuchebrukhov, A.A. Infrared Spectroscopy and Intramolecular Vibrational Relaxation of c-C6F12 Excited Above the Dissociation Threshold. Chemical Physics Letters 137: 45-50.

18.  1987 Kuzmin, M.V.; Letokhov, V.S.; Stuchebrukhov, A.A. Intramolecular Vibrational Energy Relaxation and IR Absorption Spectrum of Vibrationally Excited Polyatomics. I. Comments on Atomic and Molecular Physics 20:127-138.

19.  1987 Kuzmin, M.V.; Letokhov, V.S.; Stuchebrukhov, A.A. Intramolecular Vibrational Redistribution and IR Absorption Spectrum of Vibrationally Excited Polyatomics. II. Comments on Atomic and Molecular Physics 20: 139-151.

20.  1987 Stuchebrukhov, A.A.; Khromov, I.E. IR Absorption Spectroscopy of Highly Vibrationally Excited Polyatomic Molecules. Chemical Physics Letters 134: 251-254.

21.  1988 Ishenko, A.A.; Spiridonov, V.P.; Tarasov, Yu. I.; Stuchebrukhov, A.A. The Cumulant Method in Diffraction Analysis of Polyatomic Molecules. Journal of Molecular Structure 172: 255-273.

22.  1988 Bagratashvili, V.N.; Ionov, S.I.; Stuchebrukhov, A.A.; Letokhov, V.S.; Lokhman, V.N.; Makarov, G.N. The Homogeneous Lorentzian IR Absorption Spectrum of (CF3)3CI at Twice the Threshold Vibrational Energy. Chemical Physics Letters 146: 599-604.

23.  1988 Stuchebrukhov, A.A. Green's Functions and Diagrammatic Technique in the Theory of Gas-Phase Electron Diffraction on Vibrationally Excited Polyatomic Molecules. Part I. Journal of Molecular Structure 178: 261- 275.

24.  1988 Stuchebrukhov, A.A. On the Theory of Intramolecular Vibrational Relaxation in Highly Excited Polyatomic Molecules: Quasi-Harmonic Versus Random-Phase Approximation. Chemical Physics Letters 145: 387-391.

25.  1988 Ionov, S.I.; Stuchebrukhov, A.A.; Bagratashvili, V.N.; Letokhov, V.S.; Lokhman, V.N.; Makarov, G.N. Evolution of the Homogeneous IR Spectrum of a Highly Vibrationally Excited Molecule as a result of a Change in its Vibrational Energy. Applied PhysicsB47: 229-232.

26.  1989 Stuchebrukhov, A.A. IR Spectroscopy of Vibrational Quasi-Continuum of Multiatomic Molecules. Izvestiya Academii Nauk SSSR, Seriya Fizicheskaya (Russian) 53:1759-1762; (English translation: Bulletin of Academy of Sciences USSR, Physics Series 53: 102-105.)

27.  1989 Kuzmin, M.V.; Stuchebrukhov, A.A. Dynamical Chaos, Intramolecular Vibrational Relaxation and Spectroscopy of Vibrationally Excited Polyatomic Molecules. Laser Spectroscopy of Vibrationally Excited Polyatomic Molecules, edited by V.S. Letokhov (Adam Hilger, N.Y. Bristol, 1989) Chapter 4.

28.  1989 Stuchebrukhov, A.A.; Ionov, S.I. ; Letokhov, V.S. IR Spectra of Highly Vibrationally Excited Large Polyatomic Molecules and Intramolecular Relaxation. Journal of Physical Chemistry 93: 5357-5365.

29.  1989 Stuchebrukhov, A.A. On the Spectroscopy of Adsorbed Atoms: Quasiharmonic Approximation for the Adbond. Chemical Physics Letters 158: 274-278.

30.  1990 Boyarkin, O.V.; Ionov, S.I.; Stuchebrukhov, A.A.; Bagratashvili, V.N.; Djidjoev, M.S. IR Spectrum of Highly Vibrationally Exited OsO4 in the Region of Strong Nonlinear Interaction of Vibrational Modes. Journal of Physical Chemistry 94: 1294-1297.

31.  1990 Georgievskii, Yu. I.; Stuchebrukhov, A.A. Pure Dephasing of a Nonlinear Vibrational Mode. Non-Markovian Line Shape. Journal of Chemical Physics 93: 6699-6709.

32.  1991 Stuchebrukhov, A.A. Green's Functions in Quantum Transition State Theory. Journal of Chemical Physics 95: 4258-4276.

33.  1993 Stuchebrukhov, A.A.; Marcus, R.A. Perturbation Theory Approach to Dynamic Tunneling Splitting of Local Mode Vibrational States in ABA Molecules. Journal of Chemical Physics 98: 8443-8450.

34.  1993 Stuchebrukhov, A.A.; Marcus, R.A. Theoretical Study of Intramolecular Vibrational Relaxation of Acetylenic CH Vibration for v=1 and 2 in Large Polyatomic Molecules (CX3)3YCCH, where X=H or D and Y=C or Si. Journal of Chemical Physics 98: 6044-6061.

35.  1993 Song, X; Stuchebrukhov, A.A.Outer-Sphere Electron Transfer in Polar Solvents: Quantum Scaling of Strongly Interacting Systems. Journal of Chemical Physics 99: 969-978.

36.  1993 Stuchebrukhov, A.A., Mehta, A.; Marcus, R.A. Vibrational Superexchange Mechanism of Intramolecular Vibrational Relaxation in (CH3)3CCCH Molecules. Journal of Physical Chemistry 97: 12491- 12499.

37.  1994 Stuchebrukhov, A.A.; Marcus, R.A. Decay and Recurrences of Wave Packets in Nonlinear Quantum Systems. Journal of Physical Chemistry 98: 3285-3289.

38.  1994 Stuchebrukhov, A.A.; Song, X. Electron Transfer in Strongly Interacting Systems: Quantum Effects and the Inverted Region. Journal of Chemical Physics 101: 9354-9365.

39.  1994 Stuchebrukhov, A.A. Dispersion Relations for Electron and Hole Transfer in Donor-Bridge-Acceptor systems. Chemical Physics Letters 225: 55-61.

40.  1995 Mehta, A.; Stuchebrukhov, A.A.; Marcus, R.A. IVR in overtones of the acetylenic C-H stretch in Propyne. Journal of Physical Chemistry 99: 2677-2683.

41.  1995 Stuchebrukhov, A.A.; Marcus, R.A. Theoretical Study of Electron Trasfer in Ferrocytochromes. Journal of Physical Chemistry 99: 7581-7590.

42.   1996 Gehlen, J. N.; Daizadeh, I.; Stuchebrukhov, A.A.; Marcus, R.A. Tunneling Matrix Element in Ru-Modified Blue Copper Proteins: Pruning the Protein in Search of Electron Transfer Pathways. Inorganica Chimica Acta 243: 271-282.

43.   1996 Stuchebrukhov, A. A. Tunneling Currents in Electron Transfer Reactions in Proteins. Journal of Chemical Physics 104: 8424-8432.

44.   1996 Stuchebrukhov, A. A. Tunneling Currents in Electron Transfer Reactions in Proteins.II. Calculation of Tunneling Matrix Element and Tunneling Currents Using Non-Orthogonal Basis Sets. Journal of Chemical Physics 105: 10819-10829 (1996).

45.   1997 Stuchebrukhov, A. A. On the non-orhtogonal Basis Set Calculation of the Bridge-mediated Electronic Matrix Elements. Chemical Physics Letters 265: 643-648 (1997).

46.   1997 Daizadeh, I.; Gehlen, J. N.; Stuchebrukhov, A. A. Calculation of Electronic Tunneling Matrix Elements in Proteins. Comparison of Exact and Approximate One-electron Methods for Ru-modified Proteins. Journal of Chemical Physics 106: 5658 (1997).

47.  1997 Daizadeh, I.; Medvedev, E. S.; Stuchebrukhov, A. A. Effect of Protein Dynamics on Biological Electron Transfer. Proc. Natl. Acad. Sci. USA 94: 3703-9708 (1997).

48.  1997 Stuchebrukhov, A.A. Tunneling currents in proteins: non-orthogonal atomic basis sets and Mulliken population analysis. J. Chem. Phys. 107: 6495 (1997)

49.  1997 Medvedev, E. S.; Stuchebrukhov, A. A. Inelastic tunneling in long- distance electron transfer reactions. J. Chem. Phys. 107: 3821 (1997).

50.  1998 Stuchebrukhov, A. A. Tunneling currents in long-distance electron transfer reactions.III. Many-electron formulation. J. Chem. Phys. 108: 8499 (1998);

51.   1998 Stuchebrukhov, A. A. Tunneling currents in long-distance electron transfer reactions.IV. Many-electron formulation. Interatomic Currents and Mulliken population analysis. J. Chem. Phys. 108: 8510 (1998).

52.   1998 Heifets, E. N.; Daizadeh, I.; Guo, J. X.; Stuchebrukhov, A. A. Electron tunneling in quasi-one-dimensional resonant molecular systems. Ab initio study. J. Phys. Chem. 102: 2847 (1998).

53.  1998 Katz, D. J.; Stuchebrukhov, A.A. A new expression for superexchange matrix element in long-distance electron transfer reactions. J. Chem. Phys. 109: 4960 (1998).

54.  1998 Emile Medvedev and Alexei Stuchebrukhov.Dynamic effects in long- distance biological electron transfer reactions. IUPAC Journal v.70 (11), 2201-2210, 1998.

55.  1999 Iraj Daizadeh, Jian-xin Guo, and Alexei Stuchebrukhov. Vortex structure of the tunneling flow in long-range electron transfer reactions. J. Chem. Phys. 110, 8865, 1999

56.  1999 Margaret Chung, Iraj Daizedeh, Alexei Stuchebrukhov and Paul Heelis. Electron transfer pathways in E. coli DNA Photolyase: Trp306 to FADH. Biophys. J., 76, 1241, 1999

57.  1999 Jens Antony and Alexei Stuchebrukhov, Theoretical Study of Electron Transfer between the Photolyase Catalytic Cofactor FADH and DNA Thymine Dimer. JACS (Submitted)

58.  1999 A. A. Stuchebrukhov, DNA Repair Mechanism by Photolyase: Electron Transfer Path from FADH to DNA Thymine Dimer. Biophys. J. (Submitted)

59.  2000 A.A. Stuchebrukhov, Ab initio calculations of long-distance electron tunneling in organometallic systems of biological origin. Int. J. Quant. Chem. 77, 16, 2000.

60.  2000 Jens Antony, Dmitry M. Medvedev, and Alexei Stuchebrukhov, Theoretical Study of Electron Transfer between the Photolyase Catalytic Cofactor FADH- and DNA Thymine Dimer. JACS 122. 1057, 2000.

61.  2000 EunJoo Lee, E.S. Medvedev, and A.A. Stuchebrukhov, Effect of Quantum modes in biological electron transfer reactions. A useful approximation for the harmonic model with frequency change and Duchinsky rotation. J. Chem. Phys. 112, 9015, 2000.

62.  2000 D.M. Medvedev, I. Daizadeh, and A.A. Stuchebrukhov, Electron transfer tunneling pathways in bovine heart cytochrome c oxidase. JACS 122, 6571, 2000.

63.  2000 EunJoo Lee, E.S. Medvedev, and A.A. Stuchebrukhov, Calculation of quantum parameters for nonadiabatic redox reactions. Application to photoreduction of flavin in DNA photolyase. J. Phys. Chem. B 104, 6894, 2000.

64.  2000 J. Kim, A. Stuchebrukhov, Ab initio calculations of long-distance electron tunneling in proteins. Bioenergetics, ACS Proceedings, to be published.

65.  2000 J. Kim, A. Stuchebrukhov, Ab initio study of long-distance electron tunneling in a model peptide system. J. Phys. Chem. B 104, 8606, 2000.

66.  2000 Yu. Georgievskii, A.A. Stuchebrukhov, Concerted electron and proton transfer. Transition from nonadiabatic to adiabatic proton tunneling. J. Chem. Phys. 113, 10438, 2000.

67.  2001 A.A. Stuchebrukhov, Toward ab initio theory of long-distance electron tunneling in proteins: tunneling currents approach. Advances in Chemical Physics 118, 1-44, 2001. Invited Paper.

68.  2001 A.I. Kotelnikov, E.S. Medvedev, D.M. Medvedev, and A.A. Stuchebrukhov, Kinetic treatment of coupled electron and proton transfer in flash-photolysis experiments on carbon monoxide-inhibited mixed-valence cytochrome c oxidase. J. Phys. Chem. B, 105, 5789-5796, 2001.

69.  2001 D.M. Medvedev and A.A. Stuchebrukhov, DNA repair mechanism by photolyase: electron transfer path from FADH to DNA thymine dimer. J. Theor. Biology 210, 237-248, 2001.

70.  2002 Yu. Georgievskii, E.S. Medvedev, and A.A. Stuchebrukhov, Proton Migration via coupled surface and bulk diffusion, J. Chem. Phys. Jan 2002.

71.  2002 I. Daizadeh, D.M. Medvedev, and A.A. Stuchebrukhov, Study of electron transfer tunneling pathways in Clostridium acidurici ferredoxin: finding correlations between theory and sequence analysis. Molecular Biology and Evolution, Jan 2002.

72.  2002 Yu. Georgievskii, E.S. Medvedev, and A.A. Stuchebrukhov, Proton transport via membrane surface. Biophys. J. submitted.

73.  2002 X. Zheng, A.A. Stuchebrukhov. INDO calculations of electron tunneling in proteins. Int. J. Quant. Chem., submitted

74.  2002 Yu. Georgievskii, E.S. Medvedev, and A.A. Stuchebrukhov, Oxidoreduction of heme a in cytochrome oxidase with CO-inhibited binuclear center. Chem. Phys. Lett., submitted.

75.  2002 A.A. Stuchebrukhov, Electron tunneling in many-electron systems. Correlation, polarization, quantization, and other effects. Theoretical Chemistry Accounts Fall(2002), Invited Feature Article.

76.  2003 A.A. Stuchebrukhov, Coupled electron and proton transfer reactions. Proton pumps, cytochrome oxidase, and biological energy transduction. J. Theor. Comp. Chem., 2: 91-118 (2003) Invited Review Article.

77.  2003 X. Zheng,D.M. Medvedev, J. Swanson, A.A. Stuchebrukhov, Computer simulations of internal water in cytochrome oxidase. Biophys. Biochim Acta, 45224: 1-9 (2003)

78.  2003 Emile Medvedev and A.A. Stuchebrukhov, Breakdown of Born-Oppenheimer approximation for long-distance electronic tunneling. Chemical Physics, 296: 181-192 (2003).

79.  2004 D.Popovic, A.A. Stuchebrukhov, Electrostatic study of proton pumping mechanism in cytochrome oxidase. JACS, 126, 1858, 2004.

80.  2004 X. Zheng, D.M. Medvedev, A.A. Stuchebrukhov, Does internal water influence electron tunneling in proteins? Example of cytochrome c oxidase. Int. J. Quant. Chem., 102: 473-479 (2004).

81.  2004 D. Popovic, A.A. Stuchebrukhov, Proton pumping mechanism in cytochrome oxidase: Coulumb pump with kinetic gating. FEBS Lett., 566, 126, 2004.

82.  2004 J. Huang, D. Xu, A.A. Stuchebrukhov, and W.M. Jackson, Auto-ionization lifetime of super-excited atomic sulfur atoms. Canadian Journal of Chemistry, the Herzberg Issue, 82, 885, 2004

83.  2004 J. Quenneville, D.M. Popovic, A.A. Stuchebrukhov, Redox-dependent pKa value of CuB His ligand of cytochrome c oxidase. J. Phys. Chem. 108, 18383-18389, 2004.

84.  2004 X. Zheng, Yu. Georgievskii, and A.A. Stuchebrukhov, The orthogonalization procedure for finding tunneling orbitals in electron transfer systems. J. Chem. Phys., 121, 8680-8686, 2004.

85.  2005 D. Popovic, A.A. Stuchebrukhov, Proton exit channels in cytochrome oxidase and His291 pumping model. J. Phys. Chem., 109, 1999-2006, 2005.

86.  2005 J. Huang, D. Xu, A.A. Stuchebrukhov, and W.M. Jackson, Single photon spectroscopy of autoionizing levels of atomic sulfur and the mearsurements of their life-time. J. Chem. Phys., 122, 144321, 2005.

87.  2005 M. Tashiro, A.A. Stuchebrukhov, Thermodynamics properties of internal water molecules in the hydrophobic cavity around catalytic center of cytochrome c oxidase. J. Phys. Chem., 109, 1015-1022, 2005.

88.  2005 D.M. Popovic, J. Quenneville, A.A. Stuchebrukhov, DFT/Electrostatic calculations of pKa values in cytochrome c oxidase. J. Phys. Chem., 109, 3616-3626, 2005.

89.  2005 E.S. Medvedev and A.A. Stuchebrukhov, Kinetics of proton diffusion in the regimes of fast and slow exchange between the membrane surface and bulk solution. J. Math. Biology, 52, 209-234, 2005.

90.  2005 D.M. Medvedev, E. Medvedev, and A.A. Stuchebrukhov, Analysis of the kinetics of the membrane potential generated by cytochrome oxidase upon single electron injection. Biochim. Biophys. Acta, 1710 (2005) 47-56.

91.  2006 J. Quenneville, D.M. Popovic, A.A. Stuchebrukhov, First principles computational studies of proton pumping mechanism of cytochrome c oxidase, Combined DFT/CE calculations. Biochim. Biophys. Acta, 1757, 1035-1046, 2006.

92.  2006 J. Quenneville, D.M. Popovic, A.A. Stuchebrukhov, DFT/Continuum Electrostatics methods of pKa's calculations in proteins: Study of Cytochrome c oxidase. In: Modern Methods of Computational and Theoretical Chemistry, Elsevier, 2006.

93.  2006 D. Makhov and A.A. Stuchebrukhov, An accurate and effecient procedure for fitting elecrostatic potential by point charges for QM/MM calculations. Phys. Stat. Sol. (b), 242 (2006) 2030-2037.

94.  2006 D. Makhov, D.M. Popovic and A.A. Stuchebrukhov, Improved Density Functional Theory/Electrostatic Calculation of the His291 Protonation State in Cytochrome c Oxidase: Self-Consistent Charges for Solvation Energy Calculation. J. Phys. Chem. B, 110 (2006) 12162-12166.

95.  A.A. Stuchebrukhov, Biological electron transfer. Encyclopedia for Molecular Medicine. Invited Paper (in preparation).

96.  2006 E.S. Medvedev, A.I. Kotelnikov, N.S. Goryachev, B.L. Psikha, J.M. Ortega and A.A. Stuchebrukhov, Protein dynamics control of electron transfer in reaction centers from RPS. VIRIDIS. Molecular Simulations, 32, 735, 2006.

97.  2006 D.M. Popovic and A.A. Stuchebrukhov, Two conformational states of Glu242 and pKa's in bovine cytochrome oxidase. Photochem. Photobiol. Sci., (PPS) 5 (2006) 611-620.

98.  2006 A.A. Stuchebrukhov and D.M. Popovic , Comment on "Acidity of Cu-bound histidine in the binuclear center of cytochrome oxidase". J. Phys. Chem. B, 110 (2006) 17286-17287.

99.   2007 A.A. Stuchebrukhov, Coupled electron and proton transfer reactions in proteins and computational challenges of membrane redox pumps. Review in Computational Chemistry, Tom Cundari Ed., Wiley-VCH, 2007 (Invited Review Article).

100.   2008 X. Zheng, G. Garcia, and A.A. Stuchebrukhov, Theoretical Study of Excitation Energy Transfer in DNA Photolyase. J. Phys. Chem. B, 112, 8724- 8729 (2008).

101.  2008 R. Sugitani, E. S. Medvedev, and A. A. Stuchebrukhov, Theoretical and computational analysis of the membrane potential generated by cytochrome c oxidase upon single electron injection into the enzyme. Biochim. Biophys. Acta, 1777, 1129-1139 (2008).

102.  2008 E. S. Medvedev, A. I. Kotelnikov, A. V. Barinov , B. L. Psikha, J. M. Ortega, D. M. Popovic, and A. A. Stuchebrukhov, Protein dynamics control of electron transfer in photosynthetic reaction centers from Rps. Sulfoviridis. J. Phys. Chem., 112, 3208-3216 (2008).

103.  2009 I. Leontyev, A. A. Stuchebrukhov, Electronic continuum model for molecular dynamics simulations. J. Chem. Phys., 130, 085102 (2009).

104.   2009 I. Leontyev, A. A. Stuchebrukhov, Dielectric relaxation of cytochrome c oxidase: Comparison of microscopic and continuum models. J. Chem. Phys., 130, 085103 (2009).

105.  2009 A. A. Stuchebrukhov, Long-distance electron tunneling in proteins. in: Quantum Tunneling in Enzyme-Catalysed Reactions, R. K. Allemann, N. S. Scrutton Eds., pp. 314-342 (2009).

106.  2009 A. A. Stuchebrukhov, J. Quenneville, D. Popovic, First principles studies of proton pumping mechanism in cytochrome c oxidase. in: Computational Inorganic and Bioinorganic Chemistry, Edward I. Solomon, R. Bruce King, Robert A. Scott Eds., Wiley (2009).

107.  2009 A. A. Stuchebrukhov, Electron transfer reactions coupled to proton translocation in proteins. Computational studies of redox driven proton pumps, cytochrome c oxidase and biological energy transduction. in: Energy Flows in Proteins, D. Leitner and J. Straub Eds., Taylor and Francis/CRC Press (2009).

108.  2009 A. A. Stuchebrukhov, Mechanisms of proton transfer in proteins. Localized charge transfer versus delocalized soliton transfer. Phys. Rev. E, 79, 031927 (2009).

109.  2009 R. Sugitani, A. A. Stuchebrukhov, Molecular dynamics simulation of water in cytochrome c oxidase reveals two water exit pathways and the mechanism of its transport. Biophys. Acta, 1787 (9):1140-50 (2009).

110.  2009 V. Couch, Emile S. Medvedev, A. A. Stuchebrukhov, Electrostatics of the FeS clusters in respiratory complex I. Biochim. Biophys. Acta, 1787: 1266-71 (2009).

111.  2009 A. A. Stuchebrukhov, Long-distance electron tunneling in proteins: a new challenge for time-resolved spectroscopy. Laser Physics, 19: 1-14 (2009).